FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938716

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938716
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499455
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12400.24827061497031763No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9520.1906077624610826No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8330.16678179215344724No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8280.16578070096405081No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7530.1507643331231042No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6600.13214403700033034No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6530.13074250933517534No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6000.12013094272757306No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5850.11712766915938373No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5820.11652701444574587No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5570.11152155849876366No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5150.10311239250783355No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)