FastQCFastQC Report
Wed 31 May 2023
EGAF00007938717

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938717
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516461
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18350.35530272372938126No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7510.14541272235464053No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7490.14502547142959488No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6270.12140316500181039No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6080.11772428121387675No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5960.11540077566360286No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5640.10920476086287252No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)