FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938721

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938721
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517364
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12690.24528185184898832No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12190.2356174762836224No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10800.20875051221190496No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8970.1733788976426655No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT7740.14960453375186522No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7700.14883138370663593No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7540.14573878352571884No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7210.1393602956525773No Hit
ACGGTGCGCACGGGTGATAACGTCGTGGTCATCGGAACGGTCGT6530.12621674488367957No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6010.11616579429569895No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5750.11114031900170866No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT5440.10514840615118176No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)