FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938722

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938722
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517364
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51580.9969769833231535No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27730.5359862688551967No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12900.24934088958644204No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9690.18729559845679253No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8790.16989972243913376No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT7860.15192398388755307No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7790.15057097130840183No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7410.14322604587872367No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7200.13916700814126998No Hit
CATTCTAACGATCAGCACGCGGGTGATCACA7060.1364609829829675No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6310.12196441963491855No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6260.12099798207838196No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6050.11693894434092825No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5860.11326648162608918No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5810.11230004406955257No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG5780.11172018153563062No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5280.10205580597026465No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)