FastQCFastQC Report
Sun 21 May 2023
EGAF00007938724

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938724
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476812
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46050.9657894516077615No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37170.7795525280404016No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10410.21832504215497933No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8680.1820423982617887No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7650.16044059293809718No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7160.15016400593944784No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6700.14051659773663414No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6150.12898165314631344No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6080.12751356928936353No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA6060.1270941167588064No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5340.11199382565875018No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG5250.11010628927124316No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5220.10947711047540751No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5090.10675066902678623No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)