FastQCFastQC Report
Wed 31 May 2023
EGAF00007938725

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938725
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548161
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20470.3734304337594247No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18690.3409582221281704No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18320.33420838038459505No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15860.28933105419758065No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14080.2568588425663263No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12750.23259589792050148No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10820.19738726396077064No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT9860.17987416105852114No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9380.17111760960739636No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8900.1623610581562716No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8840.16126648922488102No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8270.15086808437667035No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7970.14539523971971738No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC7680.14010482321799617No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7230.1318955562325667No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6940.1266051397308455No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6610.12058501060819722No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6490.11839587274541605No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6280.11456488148554894No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6040.11018660575998658No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5970.1089096086733642No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5660.10325433586117946No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)