FastQCFastQC Report
Wed 31 May 2023
EGAF00007938726

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938726
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548161
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA42810.7809749325471896No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40510.7390164568438834No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20010.36503873861876346No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16660.3039253066161219No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14700.2681693881906958No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14050.256311558100631No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12790.2333256105414285No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT10690.1950156979427577No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9620.17549588533295873No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9040.16491505232951634No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8840.16126648922488102No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG8440.15396936301561037No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7900.14411824263309503No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7810.14247638923600914No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6940.1266051397308455No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6790.123868717402369No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6610.12058501060819722No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6550.11949044167680664No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6480.11821344459018426No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5830.10635561450011949No Hit

[OK]Adapter Content

Adapter graph