FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938727

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938727
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448240
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11840.2641442084597537No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11630.2594592182759236No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9690.21617883276815994No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9120.20346243084062107No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8630.1925307870783509No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8320.18561484918793503No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7910.17646796359093342No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7510.1675441727645904No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT7450.16620560414063895No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6620.14768873817597714No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6480.1445654113867571No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6060.13519543101909692No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6000.13385686239514547No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5460.12180974477958237No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5430.12114046046760663No Hit
GTCATCGTCCTCAACAATAATCGGATCATCCGGCAGACGCGGCG4780.10663930037479921No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4540.10128502587899339No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)