FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938728

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938728
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448240
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45051.0050419418168839No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22080.49259325361413525No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19730.44016598250936995No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11960.26682134570765664No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10880.24272711047653045No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10160.22666428698911298No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9770.2179635909334285No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9550.21305550597893985No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA7780.17356773157237193No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7430.16575941459932178No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6640.1481349277172943No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6290.14032661074424416No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6060.13519543101909692No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5730.12783330358736392No Hit
CCAAAAGCTGCAAAACCGTGGCTGCGTGCTC5380.12002498661431377No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5370.11980189184365518No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4550.10150812064965196No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)