FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938730

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938730
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529127
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA51420.9717893813772497No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29080.5495845042872505No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26520.5012029248176714No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA24900.47058645655957837No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19560.3696655056347531No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA17810.3365921602942205No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14490.27384729941961006No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13690.25872805583536657No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13070.2470106420575779No Hit
ATGTCCAACATGGACATCGATGGTATTAACA12840.24266385952710787No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12000.22678865376365218No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11910.22508773886042482No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11290.21337032508263612No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10610.20051896803602917No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG10390.19636117605036219No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10180.1923923746094983No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9260.17500524448761828No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8830.1668786510610874No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8450.15969701035857176No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7990.15100344529763177No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA7980.1508144547528287No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7830.14797959658078308No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7020.13267136245173652No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6910.13059246645890307No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6590.12454476902520567No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6450.12189890139796306No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6160.1164181755986748No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6100.11528423232985653No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6040.11415028906103827No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6030.11396129851623522No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5990.11320533633702307No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5880.11112644034418959No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5640.10659066726891654No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5480.10356681855206784No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)