FastQCFastQC Report
Wed 31 May 2023
EGAF00007938734

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938734
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462909
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45590.9848587951411617No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25300.5465437051342704No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17270.3730754856786107No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7740.16720348923870565No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6840.14776122304815847No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6660.14387276981004904No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6470.13976829139204466No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6070.13112728419624592No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5980.1291830575771912No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5890.12723883095813648No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5330.11514142088401824No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)