FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938737

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938737
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526820
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG24170.4587904787213849No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23580.44759120762309706No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT22920.4350632094453514No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21310.4045024866178202No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG20830.39539121521582327No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19120.3629323108462093No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG19010.3608443111499184No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG17460.3314224972476368No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16070.30503777381268743No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14560.2763752325272389No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14420.2737177783683232No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13950.2647963251205345No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12690.2408792376902927No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11500.21829087733950875No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT11220.21297596902167723No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10500.1993090619186819No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9920.18829960897460235No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9900.1879199726661858No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9820.18640142743251964No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9710.1843134277362287No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG9540.18108651911468815No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9490.18013742834364677No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9490.18013742834364677No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8720.16552143046961013No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8590.16305379446490262No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG8260.15678979537602977No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG7840.14881743289928248No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7660.14540070612353365No Hit
GTTGCGTGGGCCGGTCGGCAGGGTATCTGCTACACGAGCTACCG6960.13211343532895486No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA6810.12926616301583085No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6800.12907634486162256No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6730.12774761778216467No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6710.12736798147374814No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6640.12603925439429026No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6580.12490034546904066No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6350.12053452792225047No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6170.11711780114650167No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC6060.11502980145021069No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5980.11351125621654455No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5930.11256216544550321No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC5920.11237234729129493No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5900.1119927109828784No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA5720.10857598420712956No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5350.10155271250142364No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)