FastQCFastQC Report
Wed 31 May 2023
EGAF00007938738

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938738
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526820
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA49680.9430165901066777No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31550.5988762765270871No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30610.5810333700315098No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG25730.4884021107778748No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22690.4306973918985612No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG21870.41513230325348316No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG21470.4075395770851524No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20310.3855206711969933No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19570.3714741277855814No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18440.3500246763600471No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG17240.32724649785505483No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16270.3088341368968528No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13040.2475228730875821No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12460.23651342014350255No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC12430.23594396568087772No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG11550.21923996811055008No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11150.21164724194221934No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11090.21050833301696972No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10940.2076610607038457No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10450.19835997114764056No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10210.19380433544664213No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9990.1896283360540602No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9910.18810979082039406No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9370.17785961049314758No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9290.1763410652594814No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8690.1649519760069853No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8580.16286397631069435No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG8540.1621047036938613No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7840.14881743289928248No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7320.13894688888045253No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7260.13780797995520291No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7250.13761816180099465No Hit
GTTGTTCCGCCGGGTGCCCCGGCAACTTGCG7200.1366690710299533No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7120.13515052579628717No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6910.1311643445579135No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6870.13040507194108045No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG6640.12603925439429026No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6560.12452070916062412No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG6510.12357161838958278No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG6160.11692798299229339No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5970.11332143806233629No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5950.11294180175391974No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG5460.10364071219771459No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)