FastQCFastQC Report
Sun 21 May 2023
EGAF00007938740

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938740
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519529
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33240.6398102897047133No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18360.353397019223181No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17890.3443503635023262No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12990.250034165561499No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12070.23232581819301715No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11750.22616639302137126No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11440.22019944988633933No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10860.20903549176273123No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9260.17823836590450196No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8420.1620698748289316No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7820.1505209526320956No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7380.14205174302108256No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7380.14205174302108256No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5970.114911775858518No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)