FastQCFastQC Report
Wed 8 May 2024
EGAF00007938741

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938741
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511330
Total Bases22.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT27790.5434846381006395No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT17010.3326618817593335No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14490.28337864001721No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13120.25658576653042064No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG8580.16779770402675376No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG8410.16447304089335654No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7880.1541079146539417No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6870.13435550427316997No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5980.11694991492773746No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5450.10658478868832261No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5290.103455693974537No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)