FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511330
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49860.9751041401834433No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31270.6115424481254768No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT28320.5538497643400544No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA17560.34341814483797156No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA8530.16681986192869575No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8460.16545088299141456No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC8420.16466860931296814No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7500.14667631470870085No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7340.1435472199949152No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6960.1361156200496744No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5960.11655877808851427No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5550.10854047288443862No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5150.10071773609997457No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)