FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938754

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938754
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences408457
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13220.32365708018224687No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9910.24262039823041348No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8370.20491753109874478No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7790.1907177499712332No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7770.1902281023461466No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6270.15350453046465112No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5930.14518052083817878No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5120.12534979202217125No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5080.12437049677199803No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4850.11873954908350205No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4550.11139483470720296No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4530.11090518708211634No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4530.11090518708211634No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4260.10429494414344717No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)