FastQCFastQC Report
Wed 31 May 2023
EGAF00007938764

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938764
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417093
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA24940.5979481794228146No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13070.313359370691908No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12140.2910621851721319No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11060.26516867940723055No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10160.24359075793647939No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10120.24263173920444603No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA9340.22393087392979502No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG9170.21985504431865313No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8420.20187344309302724No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8400.20139393372701053No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7820.18748816211252647No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7220.1731028811320257No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5940.14241428170695744No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA5880.14097575360890738No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5790.13881796146183226No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5500.13186507565459024No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5350.12826875540946503No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5280.12659047262840661No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC5150.12347366174929812No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4980.11939783213815625No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4870.11676053062506443No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4810.11532200252701436No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4780.11460273847798932No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4700.11268470101392254No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG4470.10717034330473059No Hit
CAGCGTATCCTGCTGGGCTACGAAGATGAGC4460.10693058862172225No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4280.10261500432757202No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)