FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences404263
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15330.3792085845105785No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13800.3413619351758632No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11900.29436282815889653No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC11880.2938681007166127No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11710.28966291745719985No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9650.23870599090196234No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9480.23450080764254952No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9270.229306169498569No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7960.19690152202897618No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6750.1669705117708027No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6210.15361287082913846No Hit
AGATGGCGCGTTGGAAGTAACTTTGTTGTTGGTGTCATCGGCGG5960.1474287778005902No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5750.14223413965660966No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5470.13530795546463564No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5290.1308554084840809No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4980.12318713312868107No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC4700.11626094893670705No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG4110.10166648938933318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)