FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007938766

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938766
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences404263
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA29000.7173547913115966No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24540.6070305716822959No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15360.37995067567400426No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13390.3312200226090441No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12770.31588347189824445No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG12070.29856801141830935No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10080.24934263091106532No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9980.24686899369964602No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9700.239942809507672No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9320.23054298810427865No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7030.1738966959627767No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG6650.1644968745593834No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5710.14124468477204197No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5300.13110277220522285No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC5030.12442395173439073No Hit
GCGACTACCGATCGCCAGCAGGTACCGCCAA4780.11823985870584247No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA4280.105871672648746No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4280.105871672648746No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4080.10092439822590739No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)