FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938771

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938771
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420494
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17830.4240250752686126No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17600.4185553182685127No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16330.38835274700709166No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11650.2770550828311462No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11210.2665911998744334No Hit
CAGAGACAGGGTGGAATCGGCGTAAATTGCGTCACGCTGTTTGC10100.24019367696090788No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9470.22521129909106907No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7250.17241625326401805No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6970.1657574186552008No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6780.1612389237420748No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6730.16004984613335743No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5520.1312741680023972No Hit
CGGGTGCAGAGTCTGAGCGAAACCGCTGTTCAGGGACTGGGTGA5200.12366407130660605No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5180.12318844026311909No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5110.12152373161091479No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5040.11985902295871048No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4800.11415145043686711No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4790.11391363491512363No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4670.11105984865420196No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4520.10749261582804986No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4450.10582790717584556No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4430.1053522761323586No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4380.10416319852364123No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG4350.10344975195841083No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)