FastQCFastQC Report
Wed 31 May 2023
EGAF00007938772

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938772
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420494
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41150.9786108719743921No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40740.9688604355829097No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18310.43544022031229934No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15950.37931575718083965No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11790.2803845001355549No Hit
CACGCAGAACTGAAATCCCTGACCGGTGCGG9920.23591299756952536No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9920.23591299756952536No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8120.19310620365570022No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7860.18692300009036988No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7790.18525829143816558No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7390.17574567056842666No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6010.14292712856782736No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5990.14245149752434041No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5510.1310363524806537No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5460.12984727487193634No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5450.12960945935019286No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5380.12794475069798855No Hit
GTCCAGCGTGTTGCAAAACTGCGCGACGAAA5250.1248531489153234No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5130.12199936265440174No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4800.11415145043686711No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4770.11343800387163669No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4710.11201111074117585No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4570.10868169343676722No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4400.10463882956712818No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4340.10321193643666735No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA4230.10059596569748915No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)