FastQCFastQC Report
Sun 21 May 2023
EGAF00007938773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427385
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18920.44269218620213624No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18100.42350573838576455No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17250.4036173473565988No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12430.2908384711676826No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11750.2749277583443499No Hit
CAGAGACAGGGTGGAATCGGCGTAAATTGCGTCACGCTGTTTGC10200.23866069234998888No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9580.22415386595224443No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7820.18297319746832483No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7280.17033821963803128No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6930.16214888215543363No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6870.16074499572984546No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6040.14132456684254244No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5790.1354750400692584No Hit
CGGGTGCAGAGTCTGAGCGAAACCGCTGTTCAGGGACTGGGTGA5620.13149736186342526No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5330.12471191080641575No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5220.12213811902617078No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5080.11886238403313171No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5010.1172245165366122No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4970.11628859225288674No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4960.11605461118195537No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4770.11160897083425951No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4680.10950314119587724No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4450.10412157656445593No Hit
CGCCTGCACGGAAGCCAGGTCACGGCCGAAATCGTCGCTCGCCA4430.10365361442259322No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)