FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938774

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938774
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427385
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44231.0348982767294126No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40120.9387320565766231No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18210.4260795301660096No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15740.36828620564596326No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12950.30300548685611334No Hit
CACGCAGAACTGAAATCCCTGACCGGTGCGG9890.2314072791511167No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9760.22836552522900896No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8620.20169168314283373No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8410.19677808065327512No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7940.18578097031950117No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7860.18390912175205026No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6480.15161973396352235No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6210.14530224504837558No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6100.1427284532681306No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5730.13407115364367023No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5670.13266726721808206No Hit
GTCCAGCGTGTTGCAAAACTGCGCGACGAAA5640.131965324005288No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5490.12845560794131755No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5340.12494589187734713No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5120.11979830831685717No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5090.11909636510406309No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4850.1134808194017104No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4690.10973712226680862No Hit
CGCCTGAAGGGTCTGGCCCTGCAGCGCCAAG4680.10950314119587724No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4660.10903517905401452No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4370.10224972799700505No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)