FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938775

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938775
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426985
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15610.3655866131128728No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15420.36113680808459314No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14040.32881717156340384No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13630.3192149607129056No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12770.29907373795332387No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11990.2808061173109126No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10680.2501258826422474No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9220.21593264400388773No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7700.18033420377765028No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7420.17377659636755388No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7360.17237139477967608No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7200.1686241905453353No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7070.16557958710493342No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7000.16394018525240933No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6800.15925617995948335No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5780.13536775296556086No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5690.13325995058374418No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC5630.13185474899586636No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5510.12904434582011076No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5430.1271707437029404No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5270.12342353946859962No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5150.12061313629284402No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5140.1203789360281977No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5090.11920793470496623No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5070.11873953417567361No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4990.11686593205850324No Hit
GTCATCGTCCTCAACAATAATCGGATCATCCGGCAGACGCGGCG4420.10351651697366418No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4330.10140871459184748No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4320.1011745143272012No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)