FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938777

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938777
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425321
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17490.41121882060843457No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12130.28519635757463185No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11400.2680328504823416No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11000.25862818906190854No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10780.2534556252806704No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10530.2475777118928997No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9870.23206002054918523No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9700.22806303944550116No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9540.22430117487732795No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9050.21278046463729747No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8680.20408115282339692No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8560.20125975439726698No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8350.19632230715153964No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7960.18715276226661745No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7280.1711648378518813No Hit
GAAATCCGGCAGGTCGGTGGAGCAGCTGAAAACGTAGCCACCAG7000.16458157485757816No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6880.16176017643144824No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6770.15917389454082917No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6530.15353109768856935No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6260.14718295122977704No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6200.14577225201671207No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG6040.14201038744853886No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5930.1394241055579198No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5520.12978432760197592No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5510.12954921106646508No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5440.12790339531788933No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5260.12367129767869443No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5040.11849873389745628No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5040.11849873389745628No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4870.11450175279377223No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG4800.11285593704519646No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG4800.11285593704519646No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG4790.11262082050968562No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG4610.10838872287049076No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG4280.10062987719863349No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)