FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938778

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938778
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425321
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39880.9376447436171739No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24670.5800324931052075No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17510.41168905367945624No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15730.3698383103585292No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12290.2889582221428051No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12160.28590170718116437No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11950.280964259935437No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11300.26568168512723334No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10740.25251515913862704No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10440.24546166307330228No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10280.24169979850512907No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9990.2348814189753151No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8930.20995906621116756No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8900.2092537166046351No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8890.20901860006912426No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8840.20784301739157013No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG8000.18809322840866077No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7580.17821833391720607No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7390.17375111974250035No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7380.17351600320698954No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7100.16693274021268642No Hit
TCTAGCTCTAGCGGCTTTTCTGCCATCGCAG7000.16458157485757816No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6590.1549417969016343No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6240.1467127181587554No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5950.13989433862894143No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG5850.13754317327383317No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5690.13378130870565996No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5580.13119502681504086No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5280.12414153074971611No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5250.12343618114318362No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC5190.12202548193011867No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5120.12037966618154289No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG5110.12014454964603205No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5050.1187338504329671No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4990.11732315121990215No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG4900.11520710240030471No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG4720.11097500476110984No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4660.10956430554804489No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4380.10298104255374176No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)