FastQCFastQC Report
Wed 31 May 2023
EGAF00007938780

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938780
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411970
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA19360.46993713134451537No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11450.27793285918877586No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10330.25074641357380395No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9250.22453091244508094No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8150.19782993907323349No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7040.17088622957982377No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA7040.17088622957982377No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6470.15705027065077554No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG6440.1563220622860888No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5760.13981600601985583No Hit
CCAGTTACGCTGAACAGCGCCGCACCGGCTT5420.13156297788673935No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5410.13132024176517706No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5320.12913561667111684No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5100.12379542199674734No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5030.12209626914581159No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4980.12088258853800034No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4750.1152996577420686No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4500.10923125470301234No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)