FastQCFastQC Report
Wed 31 May 2023
EGAF00007940692

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940692
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491482
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19200.39065520202164067No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15370.3127276278683655No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14960.30438551157519506No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12720.25880907133933695No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12370.25168775255248416No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10590.21547075986506117No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9180.18678201846659695No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9090.1849508222071205No Hit
ATACAGGCCGGTCTGCGGGCAAACGCTCACACCTTTGACACCGG9070.18454388970501462No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8910.1812884296881676No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8750.17803296967132062No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8660.17620177341184418No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8410.17111511713552074No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8380.17050471838236192No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT8250.16785965711867373No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7910.16094180458287385No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7520.15300662079180927No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7520.15300662079180927No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG7330.14914076202180343No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG7250.14751303201337992No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7010.14262984198810943No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6190.12594560940176852No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6130.12472481189545091No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6030.12269014938492152No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5750.11699309435543927No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5200.10580245054752767No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG5200.10580245054752767No Hit
GACTTCACGAACACGAATGGTGATCTCACCTTCTTCCACAACGG5170.10519205179436886No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5140.10458165304121005No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5080.10336085553489242No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5010.10193659177752186No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)