FastQCFastQC Report
Sun 21 May 2023
EGAF00007940693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491482
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41230.8388913530912627No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36820.7491627363769172No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16240.3304291917099711No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15090.3070305728388832No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12350.2512808200503783No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11140.22666140367297274No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10360.2107910360908436No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10000.20346625105293784No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9550.19431026975555565No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG9250.1882062822239675No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9240.18800281597291457No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9130.18576468721133227No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8860.18027109843290295No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8810.17925376717763825No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8780.17864336842447942No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8640.1757948409097383No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA8640.1757948409097383No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8590.1747775096544736No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8450.17192898213973248No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7600.15463435080023277No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7280.14812343076653878No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG7200.14649570075811524No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7050.14344370699232117No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6850.13937438197126242No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6500.1322530631844096No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6070.12350401438913329No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5860.11923122311702158No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5280.10743018055595119No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5240.10661631555173942No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5190.10559898429647475No Hit
TCCGGCGACGAAGTTCGCATCCACATGGGCA5180.1053955180454218No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA5160.10498858554331594No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)