FastQCFastQC Report
Sun 21 May 2023
EGAF00007940694

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940694
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447410
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18660.4170671196441742No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18130.4052211617979035No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15110.33772155293802103No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG11720.26195212444960997No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10920.24407143336089937No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG9850.220156009029749No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9720.21725039672783353No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8590.19199392056502984No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7520.16807849623387944No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6820.15243289153125766No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6820.15243289153125766No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6520.14572763237299122No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5640.12605887217540956No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4910.10974274155696118No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4900.10951923291835229No Hit
CGCCAGCAGCGCCAGCTGGCGCGGGGAGACCGCGTCGCCAGCAT4730.10571958606200128No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)