FastQCFastQC Report
Wed 31 May 2023
EGAF00007940695

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940695
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447410
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37810.8450861625801838No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37780.8444156366643571No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20210.451710958628551No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18520.4139379987036499No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12410.2773742205136228No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC11380.25435283073690795No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA9630.2152388189803536No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8710.19467602422833644No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7790.17411322947631927No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7700.17210165172883932No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7430.1660669184863995No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6410.1432690373482935No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6280.14036342504637805No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5650.12628238081401846No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5620.12561185489819182No Hit
GGCGCCGAAACCGAAGAAGGTGGTGACGATC4960.11086028475000557No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)