FastQCFastQC Report
Sun 21 May 2023
EGAF00007940700

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940700
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460449
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14020.3044854044639037No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT7990.17352627543984242No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5620.12205477696769892No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGCAGT5200.1129332455928887No Hit
AACTTCGTGCAGGATAGAGGCCTTAGCGGACGGAATGGTACCCA4810.10446325217342203No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)