FastQCFastQC Report
Wed 31 May 2023
EGAF00007940701

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940701
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460449
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41740.9065064752013794No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14330.31121796333578744No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10870.2360739191528269No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG8560.1859054965913706No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5860.1272670806104476No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA5210.11315042491133653No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACC5030.10924119717927502No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4690.10185710035204767No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4660.10120556239670409No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4620.10033684512291263No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)