FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940702

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940702
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425588
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16030.3766553568239706No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG13180.3096891829656851No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10890.25588127484797507No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10320.24248804007631794No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9710.22815492918033406No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9070.21311691119110504No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8930.20982734475596115No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8850.20794759250730754No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8490.19948870738836622No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6820.16024887919772174No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6580.15460962245176085No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6480.15225993214094383No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6480.15225993214094383No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6380.1499102418301268No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6090.1430961399287574No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6040.14192129477334886No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5960.14004154252469522No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5820.1367519760895514No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5560.13064278128142712No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5500.12923296709493687No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5290.12429861744222112No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5160.12124402003815897No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5080.11936426778950535No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4850.11395998007462617No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4820.11325507298138104No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4800.11278513491921766No Hit
TTCGTCGGTCTCTTCCAGACGACGACCCGGAGACATACGGGCAG4670.1097305375151555No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4560.10714587817325677No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4530.10644097108001166No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4510.10597103301784824No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)