FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940703
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425588
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22950.5392539263325093No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17120.40226698121187626No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13430.3155634087427277No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG12900.30311005009539743No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9890.23238437173980472No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9740.22885983627357911No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9510.22345554855869995No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8820.2072426854140624No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8100.19032491517617978No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7770.18257093715048356No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7610.1788114326531763No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7550.1774016184666861No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6730.1581341579179864No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6720.1578991888869047No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6690.1571942817936596No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6520.15319980826527063No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6410.15061514892337188No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6180.14521086120849272No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6000.14098141864902206No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5860.1376918522138782No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5860.1376918522138782No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5660.13299247159224414No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5640.13252253353008073No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5620.13205259546791734No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5410.12711824581520154No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5320.12500352453546623No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5200.12218389616248579No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4770.11208022782597253No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4650.1092605994529921No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4570.10738084720433848No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4490.10550109495568484No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4450.10456121883135802No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4400.10338637367594951No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4330.10174159045837758No Hit
ACCCTGGAACCGGTATCCCGCATTCGTTCTC4320.10150662142729587No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4310.10127165239621418No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)