FastQCFastQC Report
Sun 21 May 2023
EGAF00007940707

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940707
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences389524
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39191.0060997525184583No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11270.2893274868814245No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9000.23105123175978887No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6310.16199258582269643No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5720.14684589396288802No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4970.1275916246495723No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4860.124767665150286No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA3900.10012220042924183No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)