FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461830
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44680.967455557239677No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA18320.3966827620553017No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16690.36138838966719355No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12530.27131195461533464No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12150.2630838187211745No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11540.24987549531212783No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11270.24402918822943506No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA9410.20375462832644045No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8660.1875148864300717No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7820.16932637550613863No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7330.15871641080051102No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6900.1494056254465929No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG6410.13879566074096528No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6200.13424853300998205No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA6050.13100058463070827No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5550.12017409003312908No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5380.11649308186995214No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA5020.10869800575969513No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4910.10631617694822772No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4660.10090292964943809No Hit

[OK]Adapter Content

Adapter graph