FastQCFastQC Report
Sun 21 May 2023
EGAF00007940711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496247
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA45530.9174866548311628No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42860.8636828031202203No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20110.40524174453447576No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19770.3983903177248426No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18310.36896948495406523No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9820.19788532726646205No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5890.11869089384923233No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5680.11445913023151778No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5640.11365308001861976No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5500.11083190427347671No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5430.10942131640090519No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5410.10901829129445618No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5380.10841375363478269No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5300.10680165320898664No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)