FastQCFastQC Report
Sun 21 May 2023
EGAF00007940714

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940714
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences569645
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12080.212061898199756No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11500.20188011831930414No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8490.14904019169833843No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8170.14342265797119258No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8160.14324711004221927No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7830.1374540283861001No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6210.10901526389242423No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6060.10638204495782462No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)