FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940717

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940717
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465163
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38960.8375558675131083No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17880.3843813888894861No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16060.34525531910319607No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15510.33343150680514144No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14640.31472838553367316No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11110.23884100842070416No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9970.2143334702029181No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9690.20831407485118117No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA8010.1721977027407597No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7340.15779414957767493No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7280.15650427914515988No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7110.15284964625303388No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6740.14489544525252437No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6570.1412408123603984No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG6310.13565137381949982No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6290.13522141700866147No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG6020.12941700006234375No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5400.11608833892635484No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5230.11243370603422886No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4840.10404954822288101No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC4810.10340461300662347No Hit

[OK]Adapter Content

Adapter graph