FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007940719

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940719
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537407
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43460.8086980631067329No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43130.8025574657568658No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG23180.4313304441512671No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16540.30777418232363923No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG15210.28302571421659933No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15010.2793041400651648No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT12400.23073759738894356No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC11400.21212972663177068No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC11200.20840815248033612No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT11040.20543089315918847No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11030.20524481445161674No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11020.205058735744045No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC9870.18365968437329622No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG9200.1711924109659904No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8250.15351493374667619No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8140.15146806796338716No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7770.1445831557832332No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7700.14328060483023108No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7580.14104766033937033No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG7530.1401172668015117No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7310.13602353523493368No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7010.13044117400778182No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6900.1283943082244928No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT6810.12671959985634723No Hit
GGTATGAACACCGCGAACACCGCTGGTACTT6410.11927645155347809No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6320.11760174318533254No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6320.11760174318533254No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6090.11332193291118275No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6060.11276369678846758No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5960.1109029097127503No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5720.10643702073102881No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5550.10327368270230941No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)