FastQCFastQC Report
Sun 21 May 2023
EGAF00007940721

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940721
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400369
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58021.4491631469968953No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11470.2864857169261356No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10830.2705004633225849No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9120.22778986385059782No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8640.21580092364793477No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8000.19981567004438405No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7190.17958433345239017No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC6680.1668460844870607No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5960.14886267418306612No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5660.14136958655640172No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5240.13087926387907156No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4920.12288663707729619No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4560.11389493192529891No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4450.11114746646218862No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4420.1103981576995222No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG4230.10565253553596807No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4220.10540276594841258No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4100.10240553089774683No Hit
AATGGCGACACCACCATCAACGGTCAGCTGA4080.10190599172263588No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)