FastQCFastQC Report
Sun 21 May 2023
EGAF00007940724

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940724
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499736
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10310.20630893111562906No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8940.1788944562729121No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7830.15668272848063777No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7560.15127987577440888No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7220.14447628347767622No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT6130.1226647669969744No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6070.12146413306225687No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6000.12006339347175309No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT5660.11325980117502042No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5430.10865737109193654No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5180.10365472969728017No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5180.10365472969728017No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5110.10225399010677638No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)