FastQCFastQC Report
Wed 31 May 2023
EGAF00007940725

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940725
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499736
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46070.9218867562072774No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19190.3840027534538236No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13420.2685417900651544No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8290.16588758864680553No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7540.15087966446283638No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6510.1302687819168521No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG6180.12366529527590567No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5970.11946307650439432No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5680.11366001248659292No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5530.11065842764979911No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5410.10825715978036404No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5180.10365472969728017No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5100.10205388445099013No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5010.10025293354891382No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5000.10005282789312757No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)