FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007940730

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940730
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500884
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT36400.726715167583712No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT36260.7239201092468516No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC33250.6638263550043523No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC31980.638471182948547No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA27680.5526229626021195No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC27360.5462342578321527No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA24320.48554156251746905No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA24130.4817482690603014No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA22170.44261745234425537No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA21340.42604674934715425No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG19710.3935042844251364No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG18990.3791296986927113No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC17680.3529759385406601No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT17080.34099711709697256No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT16000.31943523849833494No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16000.31943523849833494No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA14470.28888924381693165No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC11980.23917713482562827No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11200.22360466694883446No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT10770.2150198449141917No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT10710.21382196276982296No Hit
ATGGTAACGGATTACCTGGTCTTTACGCCAGTCGTCGTGGTATG9660.19285902524336973No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8880.1772865573665759No Hit
TTCCTCACCGGCAGCTTTTGCCTGTTCTTCAATGTTAGCAACAA7680.15332891447920077No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7550.1507335031664018No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7450.14873703292578722No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6930.13835538767459132No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6750.13476174124148504No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6560.13096844778431732No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA6380.12737480135121107No Hit
CTGCAGATAGTCGGCGTTACGGATGTCTTTCGCCGCATCTGCAG6320.12617691920684232No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT6020.12018750848499851No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5940.11859033229250684No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5810.11599492097970787No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5670.11319986264284744No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5510.1100055102578641No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG5500.10980586323380265No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5440.10860798108943388No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC5380.10741009894506513No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5310.10601256977663491No Hit
GGCGCCAATCAGACGGTGACGTTTCTGGGTGCGTTTAGATGGGA5240.10461504060820469No Hit
TTTGGACGGCATGTTAGTGTCCAGGTTTTCAGACACGGAATCCA5220.10421574656008178No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5190.10361680548789741No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5030.10042245310291406No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)