FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940732

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940732
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453724
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17750.39120698927101055No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13470.2968765152383387No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG13120.28916257460482586No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12980.28607699835142064No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12620.27814265941409316No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11670.2572048205517011No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11110.2448625155380804No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9900.2181943207765073No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8670.19108532940730488No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT7610.16772310920295158No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7520.1657395244686197No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7200.15868677874655077No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6710.14788726185963275No Hit
TTCCCAGGCGTCGGACGCTGCGTTATCAGACTGAACAACTTCCG6700.14766686355581807No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6590.14524248221385688No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6020.13267977889642163No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5970.13157778737734835No Hit
TTCCTCACCGGCAGCTTTTGCCTGTTCTTCAATGTTAGCAACAA5640.12430464335146477No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5390.11879468575609843No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5300.11681110102176653No Hit
ACGGTTCTGGATAGCAACACCGGCAGACGCGTCCCAACCGCCAC5220.1150479145912493No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5200.11460711798362No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG5180.1141663213759907No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5010.11041955021114157No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4980.10975835529969762No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4970.10953795699588295No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4860.10711357565392178No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4650.10248521127381403No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4620.10182401636237008No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)