FastQCFastQC Report
Wed 31 May 2023
EGAF00007940733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453724
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44220.9746012994683994No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29890.6587705301020004No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25010.5512161578404493No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14970.3299362608105368No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC13990.30833722703670075No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13870.3056924473909249No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12820.28255062549038623No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12080.26624115100810186No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10870.23957295624652872No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9280.2045296259399988No Hit
GCTGCTTCTAGCGATGCACTGGAAGCCCTGG8300.18293059216616267No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7900.17411466001357653No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7730.17036788884872742No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT7640.16838430411439553No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6470.14259770256808102No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6420.14149571104900777No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6410.14127531274519312No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6010.13245938059260695No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5890.12981460094683112No Hit
ACTACCGACCCGGATGCAGCGGCTTCCGCGA5800.12783101621249923No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5710.12584743147816735No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5680.12518623656672337No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5670.12496583826290873No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5650.12452504165527943No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5600.12342305013620615No Hit
TCTGTCGATGCAGCTAATGTGTCCATTGATG5410.11923548236372773No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5360.11813349084465447No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5170.11394592307217603No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5130.11306432985691742No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4910.10821556717299503No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4890.10777477056536572No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4780.10535038922340455No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)