FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007940734

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940734
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451388
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA29010.6426843425168591No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT18130.401650021710812No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG16540.36642533696066354No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG16250.360000708924473No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10450.2315081482006611No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8800.1949542300637146No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7980.17678804044414118No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGG7540.16704032894095544No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC5770.12782794403041287No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCT4690.10390174306804789No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTT4540.10057865960105275No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)