FastQCFastQC Report
Sun 21 May 2023
EGAF00007940735

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007940735
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451388
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA28320.6273981585686814No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG22710.5031148369030635No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21150.4685547688463141No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC18530.410511577622799No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC17220.3814899820110415No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG16120.35712070325307715No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8300.1838772851737308No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTACC7780.17235726248814767No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA6360.14089873900059371No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC5620.12450486056341772No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5270.11675099914042908No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC5230.11586484354923036No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC4770.10567405425044528No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTGAC4630.10257250968124983No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)